Software
urineri.github.io
personal landing page
biofaster
How fast can you read fastq/gz/bgz?
Main
RNA virus analysis toolkit, including a variety of commands and wrappers for external tools (from raw read processing to genome annotation).
Spacer Matching Bench
No description available.
CapiBex
two friends' rust exercise playground
zsh-predict
oh-my-zsh plugin using LLM to suggest/complete your current command.
Gen2Mat
Gene sharing matrix using cd-hit
what2do
Locate all TODOs from a given directory
import_mover
"Refactoring" tool that moves Python imports into the functions where they are used.
bookmark-organizer
Coding exercise to increase productivity
splitit
Streamlit-based web app to track expenses across people using OCR on receipts
pyseff
quick and dirty alternative to seff (slurm job efficiency)
NeriMisc
Neri's Miscellaneous R helper functions
AresDown4
Noise activated video capture (sort of)
bbmapy
A Python wrapper for BBTools. For the actual bbmap repo, see https://github.com/bbushnell/BBTools
spacer_matching_bench
No description available.
doi2bib
vibe coded chrome extension
pyraseq
paraseq entry for biofaster, with an attempted python example
LSV
Scripts and code used in the analyses of Haloferax volcanii 48N lemon-shaped virus
polars-dovmed
polars powered text search and extraction from NCBI's PubMed Central Open Access subset converted to parquet
ColabScan
Making it easier for non-bioinfos to search their data for RdRps
gff2parquet
Utility CLI for handling GFF files (incl. converting to parquet)
RVMT
Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.