Software
Gen2Mat
Gene sharing matrix using cd-hit
import_mover
"Refactoring" tool that moves Python imports into the functions where they are used.
bbmapy
A Python wrapper for BBTools
doi2bib
vibe coded chrome extension
bookmark-organizer
Coding exercise to increase productivity
misc
Alias file and random scripts
whattodo
Locate all TODOs from a given directory
splitit
Streamlit-based web app to track expenses across people using OCR on receipts
pyseff
Quick and dirty alternative to seff (slurm job efficiency)
NeriMisc
Neri's Miscellaneous R helper functions
AresDown4
Noise activated video capture (sort of)
RolyPoly
RNA virus analysis toolkit, including a variety of commands and wrappers for external tools (from raw read processing to genome annotation).
Spacer Matching Bench
A tool to benchmark spacer matching tools.
LSV
Scripts and code used in the analyses of Haloferax volcanii 48N lemon-shaped virus
urineri.github.io
My personal website
ColabScan
Making it easier for non-bioinfos to search their data for RdRps
RVMT
Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.